Waman VP, Kolekar PS, Kale MM, Kulkarni-Kale U. (2014). Population Structure and Evolution of Rhinoviruses. PLoS ONE, 9(2): e88981. DOI: 10.1371/journal.pone.0088981 [PMID:24586469]
Palmenberg AC, Spiro D, Kuzmickas R, Wang S, Djikeng A, Rathe JA, Fraser-Liggett CM, Liggett SB. Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. Science 2009, 324(5923): 55-59. [PMID:19213880]
Simmonds P, McIntyre C, Savolainen-Kopra C, Tapparel C, Mackay IM, Hovi T. Proposals for the classification of human rhinovirus species C into genotypically assigned types. Journal of general virology 2010, 91(10): 2409-19. [PMID:20610666]
Palmenberg AC, Rathe JA, Liggett SB. Analysis of the complete genome sequences of human rhinovirus. Journal of Allergy and Clinical Immunology, 2010, 125(6): 1190-99. [PMID:20471068]
McIntyre C, McWilliam Leitch EC, Savolainen-Kopra C, Hovi T, Simmonds P. Analysis of genetic diversity and sites of recombination in human rhinovirus species C (HRV-C). Journal of virology 2010, 84(19): 10297-31.[PMID:20668080]
Ledford RM, Patel NR, Demenczuk TM, Watanyar A, Herbertz T, Collett MS, Pevear DC. VP1 sequencing of all human rhinovirus serotypes: insights into genus phylogeny and susceptibility to antiviral capsid-binding compounds. Journal of virology, 2004, 78(7): 3663-74. [PMID: 15016887]
Kolekar P, Kale M, Kulkarni-Kale U: Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution, 2012, 65(2): 510-522. [PMID: 22820020]
Kolekar, P., Hake, N., Kale, M., Kulkarni-Kale, U., WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution, Journal of Virological Methods, 2014, 198:41-55. [PubMed: 24388930]
Kolekar, Pandurang, Kale, Mohan, and Kulkarni-Kale, Urmila. Subtyping of Dengue Viruses using Return Time Distribution based Appproach. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2011.5590.1 (2011)
Kolekar P, Kale M, Kulkarni Kale U: Genotyping of Mumps viruses based on SH gene: Development of a server using alignment-free and alignment-based methods. Immunome Research, 2011, 7(3):1-7 [Publisher's full text]
Kolekar P, Kale M, Kulkarni-Kale U: `Inter-Arrival Time' Inspired Algorithm and its Application in Clustering and Molecular Phylogeny. American Institute of Physics Conf Proc. 2010, 1298(1):307-312. [Abstract]
