IRESPred

References and Credits:

  • Baird, S.D., Turcotte, M., Korneluk, R.G. and Holcik, M. (2006) Searching for IRES. RNA, 12, 1755-1785.

  • Cherry, S., Doukas, T., Armknecht, S., Whelan, S., Wang, H., Sarnow, P. and Perrimon, N. (2005) Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition. Genes Dev, 19, 445-452.

  • Chih-Chung, C. and Chih-Jen, L. (2011) LIBSVM: A library for support vector machines. ACM Trans. Intell. Syst. Technol., 2, 1-27.

  • Eisenberg, E. and Levanon, E.Y. (2013) Human housekeeping genes, revisited. Trends Genet, 29, 569-574.

  • Hong, J.J., Wu, T.Y., Chang, T.Y. and Chen, C.Y. (2013) Viral IRES prediction system - a web server for prediction of the IRES secondary structure in silico. PLoS One, 8, e79288.

  • Lorenz, R., Bernhart, S.H., Honer Zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P.F. and Hofacker, I.L. (2011) ViennaRNA Package 2.0. Algorithms Mol Biol, 6, 26.

  • Meric, F. and Hunt, K.K. (2002) Translation initiation in cancer: a novel target for therapy. Mol Cancer Ther, 1, 971-979.

  • Mokrejs, M., Masek, T., Vopalensky, V., Hlubucek, P., Delbos, P. and Pospisek, M. (2010) IRESite--a tool for the examination of viral and cellular internal ribosome entry sites. Nucleic Acids Res, 38, D131-136.

  • Muppirala, U.K., Honavar, V.G. and Dobbs, D. (2011) Predicting RNA-protein interactions using only sequence information. BMC Bioinformatics, 12, 489.

  • Thompson, S.R. (2012) Tricks an IRES uses to enslave ribosomes. Trends Microbiol, 20, 558-566.

  • Wu, T.Y., Hsieh, C.C., Hong, J.J., Chen, C.Y. and Tsai, Y.S. (2009) IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico. BMC Bioinformatics, 10, 160.

Credits: